CGAP
CGAP for Genetics Education
CGAP is a powerful educational tool for training molecular and clinical geneticists, genetic counselors, genome scientists, and molecular genetics pathologists
CGAP for Genetics Education
CGAP is a powerful educational tool for training molecular and clinical geneticists, genetic counselors, genome scientists, and molecular genetics pathologists
CGAP for Genetics Education
CGAP is a powerful educational tool for training molecular and clinical geneticists, genetic counselors, genome scientists, and molecular genetics pathologists
CGAP Training Portal:
A Sandbox for Data Analysis
A Sandbox for Data Analysis
CGAP Training Portal:
A Sandbox for Data Analysis
A Sandbox for Data Analysis
CGAP Training Portal:
A Sandbox for Data Analysis
A Sandbox for Data Analysis
Use CGAP's training portal to get familiarized with the clinical and research whole genome/exome analysis workflows
Start Now
Data are preloaded and ready for immediate analysis
Curated Data
Analyze cases with clinically relevant findings
Explore Freely
Test without consequence; cases are reset frequently
Full Access Demo
Try all of CGAP’s features on robust bioinformatic data
Learn As You Go
Access tutorial videos and helpful documentation
Analysis Workflow Tutorials
Analysis Workflow Tutorials
Analysis Workflow Tutorials
The training portal currently has 2 cases that can be analyzed for educational and training purposes:
The training portal currently has 2 cases that can be analyzed for educational and training purposes:
Phenotype-First Approach
Phenotype-First Approach
Phenotype-First
Approach
Approach
The BRCA-PROBAND Case
Our BRCA-PROBAND case is recommended for Clinical Workflow Training.
Watch an expert employ CGAP’s rich clinical features and functionality to complete an end to end case analysis following ACMG Guidelines.
Watch an expert employ CGAP’s rich clinical features and functionality to complete an end to end case analysis following ACMG Guidelines.
Our BRCA-PROBAND case is recommended for Clinical Workflow Training.
Watch an expert employ CGAP’s rich clinical features and functionality to complete an end to end case analysis following ACMG Guidelines.
Watch an expert employ CGAP’s rich clinical features and functionality to complete an end to end case analysis following ACMG Guidelines.
Genotype-First
Approach
Approach
Genotype-First
Approach
Approach
Genotype-First
Approach
The UNDIAGNOSED-TRIO Case
Our UNDIAGNOSED-TRIO case is recommended for Discovery Workflow Training.
Watch an expert walkthrough CGAP’s powerful research and discovery analysis tools from accessioning to interpretation.
Watch an expert walkthrough CGAP’s powerful research and discovery analysis tools from accessioning to interpretation.
Our UNDIAGNOSED-TRIO case is recommended for Discovery Workflow Training.
Watch an expert walkthrough CGAP’s powerful research and discovery analysis tools from accessioning to interpretation.
Watch an expert walkthrough CGAP’s powerful research and discovery analysis tools from accessioning to interpretation.
Our UNDIAGNOSED-TRIO case is recommended for Discovery Workflow Training .
Watch an expert walkthrough CGAP’s powerful research and discovery analysis tools from accessioning to interpretation.
CGAP currently prioritizes variants based on gene lists. Gene-Disease-Phenotypes prioritization is under development.
CGAP Feature Tutorials
CGAP Feature Tutorials
The training portal also has many features for users to explore and test while analyzing the sample cases.
The training portal also has many features for users to explore and test while analyzing the sample cases.
Structural Variant
Analysis
Analysis
Structural Variant
Analysis
Analysis
Structural Variant
Analysis
Analysis
Interested in SV analysis with CGAP?
Watch an expert use CGAP's Structural Variant Filtering and Interpretation interfaces and browsers on the CGAP Training Portal.
Watch an expert use CGAP's Structural Variant Filtering and Interpretation interfaces and browsers on the CGAP Training Portal.
Interested in SV analysis with CGAP?
Watch an expert use CGAP's Structural Variant Filtering and Interpretation interfaces and browsers on the CGAP Training Portal.
Watch an expert use CGAP's Structural Variant Filtering and Interpretation interfaces and browsers on the CGAP Training Portal.
Cohort
Analysis
Analysis
Cohort
Analysis
Analysis
Cohort
Analysis
Analysis
Looking to discover genetic variants in a Cohort?
Watch an expert analyze genetic variants in a cohort of individuals using CGAP's Cohort Browser and search interfaces.
Watch an expert analyze genetic variants in a cohort of individuals using CGAP's Cohort Browser and search interfaces.
Looking to discover genetic variants in a Cohort?
Watch an expert analyze genetic variants in a cohort of individuals using CGAP's Cohort Browser and search interfaces.
Watch an expert analyze genetic variants in a cohort of individuals using CGAP's Cohort Browser and search interfaces.
Want to understand how to Submit Data to CGAP?
Follow an expert as they walkthrough various methods for Data Submission, from Gene Lists to new Cases to the CGAP Portal.
Data Submission
Data Submission
Want to understand how to Submit Data to CGAP?
Want to understand how to Submit Data to CGAP?
Follow an expert as they walk through methods for submitting various types of files and metadata to the CGAP Portal: from Gene Lists to new Cases and more.
Our robust submission options can support a variety of data management strategies.
Our robust submission options can support a variety of data management strategies.
Follow an expert as they walk through methods for submitting various types of files and metadata to the CGAP Portal: from Gene Lists to new Cases and more.
Our robust submission options can support a variety of data management strategies.
Our robust submission options can support a variety of data management strategies.
CGAP Training at Harvard
CGAP Training at Harvard
CGAP Training at Harvard
The CGAP Training Portal is being utilized to advance the mission of the HMS Genetics Training Programs, and is incorporated into the curriculum of several courses including Introduction to Genomics and Precision Medicine in Genomics.
Feedback from world-class professionals allows us to continuously build an advanced and user-tested, open-source platform for genetics education.
Feedback from world-class professionals allows us to continuously build an advanced and user-tested, open-source platform for genetics education.
The CGAP Training Portal is being utilized to advance the mission of the HMS Genetics Training Programs, and is incorporated into the curriculum of several courses including Introduction to Genomics and Precision Medicine in Genomics.
Feedback from world-class professionals allows us to continuously build an advanced and user-tested, open-source platform for genetics education.
Feedback from world-class professionals allows us to continuously build an advanced and user-tested, open-source platform for genetics education.
The CGAP Training Portal is being utilized to advance the mission of the HMS Genetics Training Programs, and is incorporated into the curriculum of several courses including Introduction to Genomics and Precision Medicine in Genomics.
Feedback from world-class professionals allows us to continuously build an advanced and user-tested, open-source platform for genetics education.
Feedback from world-class professionals allows us to continuously build an advanced and user-tested, open-source platform for genetics education.
Interested in analyzing your own data with CGAP?
Contact us to create your secure project, and upload your data following the
Submitting Files to CGAP tutorials.
Submitting Files to CGAP tutorials.
Contact us to create your secure project, and upload your data following the
Submitting Files to CGAP tutorials.
Submitting Files to CGAP tutorials.
Get Started with the CGAP Training Portal
Get Started with the CGAP Training Portal
Get Started with the CGAP Training Portal
The login button is in the upper right and you should be able to self-register using an email address that is associated with a google account. Extra login information can be found here and feel free to email cgap-support@hms-dbmi.atlassian.net if you have any questions.
The login button is in the upper right and you should be able to self-register using an email address that is associated with a google account. Extra login information can be found here and feel free to email cgap-support@hms-dbmi.atlassian.net if you have any questions.